PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02906.1.p
Common NameEUGRSUZ_F02906
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 647aa    MW: 71377.7 Da    PI: 10.4063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02906.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-16268312147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Eucgr.F02906.1.p 268 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 312
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-16262316IPR009057Homeodomain-like
PROSITE profilePS5129421.476263317IPR017930Myb domain
TIGRFAMsTIGR015578.3E-17266315IPR006447Myb domain, plants
SMARTSM007172.5E-13267315IPR001005SANT/Myb domain
PfamPF002498.3E-14268311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9268310IPR009057Homeodomain-like
CDDcd001672.54E-10270313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MEKKAEGGER DARERHVGGA LRDVSHKIPS CVLEHITTDT LLFSLSLHRS PKSNPVRSRK  60
EQIFNSTFFS SLPFSLSLSV SGLELPDRPP SLLFFRVLKD FRARCSPPWS NRRFLQFASR  120
TKAWIESLHF EVGGFLFLSF GARELSRRRA RTDGTTATAA VRRDPDRSVF ERSRSIRGQR  180
RKPGRETFVL TLFGVGKTRS RAVCVGADMT VQDQDGSAHS SNMIVGSNEM SLSDSLHSIT  240
SISLKEQFSC ANDYAPKVRK PYTITKQRER WTEEEHKKFL EALKLYGRAW RRIEEHVGTK  300
TAVQIRSHAQ KFFSKVVKDP TDGKVETIEI PPPRPKRKPM HPYPRKLLAH PINKESLPQE  360
QPIRSGSPNF SVSELENQSP MSVLSTLGSD GLGSSGASTP SGSSSPSSSG GAACRAGLSL  420
FESPAEENGP ITSEKLELHA RGCEASGGAM EEAPSRTLKL FGMTVSVTDS HWQSSSAIKS  480
ESKEMKLQDP LSQDTLSATS PAKTNRVLNL VQPRDTSTDR MEAGPAPSAP WLNLYGNLTI  540
SLSPIRNKVA PRSTCGDINK NGIPESRNGV TSNEFHSGFD LKLSFLSKPS STSVAPELMT  600
RQERRGRGFM PYKRCMAEKE TQPSGATGLE REVQRVRLSL ECASSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02906.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062320.10.0PREDICTED: protein REVEILLE 2
TrEMBLA0A059BV060.0A0A059BV06_EUCGR; Uncharacterized protein
STRINGXP_010062320.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.19e-40MYB_related family protein