PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F02845.1.p

Common Name

EUGRSUZ_F02845

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 93aa MW: 10695.4 Da PI: 10.2715

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F02845.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.6e-18	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+++G g W+ ++r+ g++R++k+c++rw++yl Eucgr.F02845.1.p 9 KGAWTEEEDVLLRKCVEKYGEGKWHQVPRRGGLNRCRKSCRLRWLNYL 56 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.427	4	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-23	5	58	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	9	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.49E-22	10	85	IPR009057	Homeodomain-like
CDD	cd00167	3.55E-11	11	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-7	59	83	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MEGAAGVRKG AWTEEEDVLL RKCVEKYGEG KWHQVPRRGG LNRCRKSCRL RWLNYLKPNI 60 KRGAFQDDEV DMIIRLHKLL GNRQSCHLFG AT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-12	9	83	4	77	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-12	9	83	4	77	C-Myb DNA-Binding Domain
1msf_C	2e-12	9	83	4	77	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F02845.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018731301.1	2e-55	PREDICTED: transcription factor MYB75 isoform X1
Swissprot	Q9FNV9	4e-41	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A059BTU0	8e-62	A0A059BTU0_EUCGR; Uncharacterized protein
STRING	XP_010064838.1	1e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-43	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Eucgr.F02845.1.p

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]