PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F02794.1.p | ||||||||
Common Name | EUGRSUZ_F02794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28066.1 Da PI: 10.4937 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.2 | 1.6e-16 | 9 | 57 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE....E-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii....fsstgk 45 k i+n++ r +tf kR++g++KKA E +LC+++ +vii +ss+g Eucgr.F02794.1.p 9 KLISNSRSRRTTFEKRKKGLMKKAGEFKTLCGVDTCVIInpigISSDGL 57 569***********************************95555677773 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-16 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.801 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.09E-18 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-19 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-16 | 11 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRAKLKLKL ISNSRSRRTT FEKRKKGLMK KAGEFKTLCG VDTCVIINPI GISSDGLVKM 60 ETWPPDRKEV ERIVRRYQSE ATDRRARHAT GLHEFFASRK KKIDAELAKA HRANWEAKYP 120 VSEEIFKDLS DPQLRSLLSA VDDRLEQAKT RLATMKEKRR VEKAAPNSSV GSNHDYSSPL 180 ISLPPEDSTQ FGPSREDYSW CSTVNEAQSM ICDPRSNFYH QIKLKPHSDR KQSTGRAIFL 240 VSQVKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 25 | RSRRTTFEKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F02794.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064825.2 | 1e-136 | PREDICTED: uncharacterized protein LOC104451981 | ||||
TrEMBL | A0A059BT66 | 0.0 | A0A059BT66_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064825.1 | 1e-156 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-20 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F02794.1.p |