PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02141.2.p
Common NameEUGRSUZ_F02141
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18579.4 Da    PI: 9.0618
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02141.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n + rqvtfskRr g++KKAeELSvLCda+v++i+fs tgkly++ss
  Eucgr.F02141.2.p  9 KKIDNLTARQVTFSKRRRGLIKKAEELSVLCDADVSLIVFSATGKLYDFSS 59
                      68***********************************************96 PP
2K-box43.41.4e-151001582785
             K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                       e+    +++R+++GedLe L+++eL qLe++Le +l+ + + K+e   ++i++lq+k +
  Eucgr.F02141.2.p 100 EVYDRAHKLRQMKGEDLEGLNVEELDQLEKKLEAGLSLVIKNKEEKTWNEINKLQRKVH 158
                       444445789***********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-30385IPR002100Transcription factor, MADS-box
PfamPF003194.8E-241057IPR002100Transcription factor, MADS-box
CDDcd002651.20E-311275No hitNo description
PRINTSPR004044.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.79487160IPR002487Transcription factor, K-box
PfamPF014861.6E-1195158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAKEKIKIKK IDNLTARQVT FSKRRRGLIK KAEELSVLCD ADVSLIVFSA TGKLYDFSSS  60
RMEDTLTRYY GFHSNKVEKS VQPCLALEIE NTNREMLHEE VYDRAHKLRQ MKGEDLEGLN  120
VEELDQLEKK LEAGLSLVIK NKEEKTWNEI NKLQRKVHAP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18169169MEF2C
5f28_B8e-18169169MEF2C
5f28_C8e-18169169MEF2C
5f28_D8e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02141.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061528.11e-112PREDICTED: MADS-box protein JOINTLESS isoform X3
SwissprotQ9FUY64e-61JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A059BRD21e-113A0A059BRD2_EUCGR; Uncharacterized protein
STRINGXP_010061527.11e-110(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]