PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00659.3.p
Common NameEUGRSUZ_F00659
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 190aa    MW: 21099.8 Da    PI: 12.3353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00659.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-184090155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g++ AeI dp++   ++r++lg+f +aeeAa+a++ a+ +++g
  Eucgr.F00659.3.p 40 PKYRGVRRRR-WGKYTAEISDPVK---KARVWLGTFASAEEAARAYDLAAVRFRG 90
                      79*****777.**********644...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124090IPR001471AP2/ERF domain
CDDcd000181.91E-2540100No hitNo description
Gene3DG3DSA:3.30.730.106.1E-304199IPR001471AP2/ERF domain
SMARTSM003802.0E-3541104IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2241100IPR016177DNA-binding domain
PROSITE profilePS5103223.2484198IPR001471AP2/ERF domain
PRINTSPR003672.8E-104253IPR001471AP2/ERF domain
PRINTSPR003672.8E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MIPSRAAAAP DDVPEVAGSA PKGHVQQQQQ PQQQVGAGEP KYRGVRRRRW GKYTAEISDP  60
VKKARVWLGT FASAEEAARA YDLAAVRFRG SKAKTNFPAS LYDRDDAQAQ APARIRRHAA  120
AREDPQQGRR AFPQRSRRRG TGGHRRWSRR TARATAIRRR PWWTIAEGAS RRGPRRRRGS  180
GGGVLCLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-184298663ATERF1
3gcc_A2e-184298663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157177RRRPWWTIAEGASRRGPRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00659.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060282.12e-89PREDICTED: ethylene-responsive transcription factor 3
TrEMBLA0A059BM401e-129A0A059BM40_EUCGR; Uncharacterized protein
STRINGXP_010060282.19e-89(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-18ERF domain protein 10