PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F00114.2.p

Common Name

EUGRSUZ_F00114, LOC104447815

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 278aa MW: 28045.2 Da PI: 8.5988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F00114.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC Cgk F++ L H +H Eucgr.F00114.2.p 105 YKCAVCGKGFPSYQALGGHKASH 127 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.367	105	132	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.037	105	127	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-12	105	129	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.96E-9	105	127	No hit	No description
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.96E-9	169	196	No hit	No description
PROSITE profile	PS50157	9.411	174	196	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	174	196	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.6E-13	174	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	176	196	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MALEAINSPT AASAPFQFME EPLSSRFLEP LNKRKRSKRP HHPPSEDEYL ALCLIMLARS 60 GAAPKPNHHA SPAPLPPPPP PAPTKPEEAA ATATATAAPA NNLSYKCAVC GKGFPSYQAL 120 GGHKASHRKS AAAAAAAAAA AAASSAGADE PSTSATNSGG GAAAASSSGG GRSHECSICH 180 KSFPTGQALG GHKRCHYDGG ASGSANSGVT TSEGVGSAAP PALGYDSGRR NFDLNVPALP 240 EFPTGFIVSG DDEVESPHPS KKPRFSTPLK IKLSPEQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	NKRKRSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F00114.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018732227.1	0.0	PREDICTED: zinc finger protein ZAT10
TrEMBL	A0A059BKQ2	0.0	A0A059BKQ2_EUCGR; Uncharacterized protein
STRING	XP_010059845.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	2e-50	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Eucgr.F00114.2.p
Entrez Gene	104447815