PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E03314.1.p

Common Name

EUGRSUZ_E03314, LOC104445286

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LSD

Protein Properties

Length: 453aa MW: 48921.4 Da PI: 3.9106

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E03314.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	24.5	4.5e-08	364	388	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ l+sY +GA++V+C +C t+ Eucgr.E03314.1.p 364 CGSCQRLISYQPGAKYVQCLCCKTI 388 **********************997 PP
2	zf-LSD1	33.2	8.6e-11	402	426	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C lL+YP+GAp+V+C+ C V Eucgr.E03314.1.p 402 CGTCAMLLMYPYGAPAVKCSACRSV 426 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.5E-10	361	391	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-6	364	388	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.4E-9	399	428	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-9	402	426	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MEAQEELREE RMAEDEVEEE EEEGPPPGWE SGPPPPLPTS PLSARIETSA AMEVVGEEQT 60 ERPDEAEERE QEEKESPPPG WEAAACPSIG QQSEGTESEA VALVGEERAA EERMEEEQEE 120 EEEQDGPPPG WEAGARPSLE PGSEGMESEA VMEEEAKEEV DGLSSGWGID PHRPIEPPQS 180 ERMVKSDEME EAEEAEDGPP PGWGIDSHPS VEPQSERIES EESARENAMG EGAKKERGVE 240 DGPPPGWGIG PHSTIEPQSE MIESEGAAQE NGIGERAEGD EMEEDGPPPG WGNAPHRSIE 300 PGSEGIESKR VVEEERVKDD GAPPGWEPAP PPPASKVLQP APSTLMPSAP QPGRRTSEMA 360 QMVCGSCQRL ISYQPGAKYV QCLCCKTINF VLEEHLVGQV KCGTCAMLLM YPYGAPAVKC 420 SACRSVTEIG EHNKRTPWAV QQGRLPPPST VP*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MEAQEELREE RMAEDEVEEE EEEGPPPGWE SGPPPPLPTS PLSARIETSA AMEVVGEEQT  60
ERPDEAEERE QEEKESPPPG WEAAACPSIG QQSEGTESEA VALVGEERAA EERMEEEQEE  120
EEEQDGPPPG WEAGARPSLE PGSEGMESEA VMEEEAKEEV DGLSSGWGID PHRPIEPPQS  180
ERMVKSDEME EAEEAEDGPP PGWGIDSHPS VEPQSERIES EESARENAMG EGAKKERGVE  240
DGPPPGWGIG PHSTIEPQSE MIESEGAAQE NGIGERAEGD EMEEDGPPPG WGNAPHRSIE  300
PGSEGIESKR VVEEERVKDD GAPPGWEPAP PPPASKVLQP APSTLMPSAP QPGRRTSEMA  360
QMVCGSCQRL ISYQPGAKYV QCLCCKTINF VLEEHLVGQV KCGTCAMLLM YPYGAPAVKC  420
SACRSVTEIG EHNKRTPWAV QQGRLPPPST VP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E03314.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057425.1	0.0	PREDICTED: actin cytoskeleton-regulatory complex protein PAN1
TrEMBL	A0A059C9I8	0.0	A0A059C9I8_EUCGR; Uncharacterized protein
STRING	XP_010057425.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-36	lsd one like 2

Link Out ? help Back to Top
Phytozome	Eucgr.E03314.1.p
Entrez Gene	104445286