PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03255.1.p
Common NameEUGRSUZ_E03255
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 714aa    MW: 77489.7 Da    PI: 5.1574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03255.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-07133152525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C+ffa+ G+C  G++C+F H
  Eucgr.E03255.1.p 133 ICSFFAK-GWCIKGSSCRFLH 152
                       6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0062128154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6128152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558128155IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5133152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPPQPPPPYP PAAVADDDSD DDEWEDVSEE EEEEGGYAGR DREMIADEED DEEEEEEEGG  60
GGGGAEEARG GGGGGGGGWE GGSAGRTEKD KQADLQPRDG MPLSSRLTTS GARLRSLSPG  120
LELPERNKRA AIICSFFAKG WCIKGSSCRF LHIKDNVNST PELVCRHGTG SSCIEEAVHD  180
EGRKDDFEKS KSPGLPKQLA SSVANNSALC YGSSLEQIQS QVARENESMH QINPIAISRP  240
LSVEDLLFSA PTDSHQLPPC KHHDGHMSAD VDNGRDFQER SWSADDYRMH ASKLSSGGSG  300
SMRGYWLPPS SGSIQSFNLG QNKQPTSHAS ITEDQVTNQG KFFGNSSPIT SPALNSSVKY  360
PSTTAILPSQ HSSWLSGSSR ILSSFSEFSN PLPGQSILDV DYAGLRSSSL LGSSSNLAGS  420
YSGNLSRANI SADSRPRFGN RRTFSSYDWE PSEPFRPSFL ITPTSISSPG SKCDPFHDRI  480
EQHKTRDESF RLFSSQGASV LNTAEQQVHS DSKRNLAEER GNNSYSVSSD HRFNEHGLGK  540
GSYLHGKDVN GSAVETAENS VVDSQTENEM SKENDQLSDH AKDSSHISGS SMDLGSALGS  600
DVAGHKDKVR QDIEMDVMQK KAADVNQESK ALRHFRVALI DYVKELLKPA WQGGRLSKDA  660
HNLIVKKAVD KVLTTLQPQQ IPPNPESIKH FLSFSQFKLT RLVEAYVTKH GKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03255.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057376.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A059C8J10.0A0A059C8J1_EUCGR; Uncharacterized protein
STRINGXP_010057376.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-30C3H family protein