PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02783.1.p

Common Name

EUGRSUZ_E02783

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 371aa MW: 40572.4 Da PI: 5.77

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02783.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	163	221	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+edp+++ itY+ eHnh+ Eucgr.E02783.1.p 163 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSREDPTMLLITYSCEHNHP 221 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-31	160	223	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-26	160	223	IPR003657	WRKY domain
SMART	SM00774	6.8E-36	162	222	IPR003657	WRKY domain
PROSITE profile	PS50811	31.904	163	223	IPR003657	WRKY domain
Pfam	PF03106	5.9E-26	164	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDEIRIFDLC RKPDIIKKGL PLPSSSSPIC LLPSNSLSPL QTLRPSALPV FHNDQPPVSG 60 SSHGEIRCSS HPPAPTMHGS FQSGSFMTEH DDNGSSPENS IGESPPPPSR YGDTMKTGPT 120 APSPKRRSVV EKSRRGMQKR VVSIPIKDVE GSRLKGEGAP PPSDSWAWRK YGQKPIKGSP 180 YPRGYYRCSS SKGCPARKQV ERSREDPTML LITYSCEHNH PWPAAKNNHH HLNHQNSSAV 240 TSADEEKPKM PANLPNPEAE PEPEPEPDPE PEEKFPDMSD ESVLMSATDE FSWFMDMPTT 300 SSTILESPIF TESGNNSASK GAAIDADMAM FFPMREEDES LFADLGELPE CSVVLRHGRS 360 GGVSTQVQIC *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDEIRIFDLC RKPDIIKKGL PLPSSSSPIC LLPSNSLSPL QTLRPSALPV FHNDQPPVSG  60
SSHGEIRCSS HPPAPTMHGS FQSGSFMTEH DDNGSSPENS IGESPPPPSR YGDTMKTGPT  120
APSPKRRSVV EKSRRGMQKR VVSIPIKDVE GSRLKGEGAP PPSDSWAWRK YGQKPIKGSP  180
YPRGYYRCSS SKGCPARKQV ERSREDPTML LITYSCEHNH PWPAAKNNHH HLNHQNSSAV  240
TSADEEKPKM PANLPNPEAE PEPEPEPDPE PEEKFPDMSD ESVLMSATDE FSWFMDMPTT  300
SSTILESPIF TESGNNSASK GAAIDADMAM FFPMREEDES LFADLGELPE CSVVLRHGRS  360
GGVSTQVQIC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-21	139	224	6	80	Disease resistance protein RRS1
5w3x_D	9e-21	139	224	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02783.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057124.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	4e-78	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A059C710	0.0	A0A059C710_EUCGR; Uncharacterized protein
STRING	XP_010057124.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-77	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Eucgr.E02783.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]