PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02500.2.p
Common NameEUGRSUZ_E02500
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 362aa    MW: 39268.1 Da    PI: 7.3282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06104127226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++lC+f+   G C  Gd C+F H+
  Eucgr.E02500.2.p 104 QEKLCNFWIT-GNCVKGDACPFLHS 127
                       578***9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4652450IPR000571Zinc finger, CCCH-type
SMARTSM003560.00172549IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5104127IPR000571Zinc finger, CCCH-type
SMARTSM003203.7E-6133172IPR001680WD40 repeat
SuperFamilySSF509781.04E-37133356IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.8E-16136234IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.7E-5137172IPR001680WD40 repeat
PROSITE profilePS5029421.99140342IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.349140181IPR001680WD40 repeat
PRINTSPR003207.3E-8159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM003201.6212249IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.108.2E-23235352IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.6E-4256293IPR001680WD40 repeat
PfamPF004000.0057262293IPR001680WD40 repeat
PROSITE profilePS5008213.082263302IPR001680WD40 repeat
PRINTSPR003207.3E-8280294IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
SMARTSM003201.6E-4296333IPR001680WD40 repeat
PfamPF004000.011298332IPR001680WD40 repeat
PRINTSPR003207.3E-8320334IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAIKTARSTV GWQQNSAAHY KAPTSRRRVC TFWLAGKCNR NPCRFSHDAS LPGNVYHRAA  60
KQSSHMAEDF PGRKGPESSP VNSASSTSGE RSESSTNKNP LKPQEKLCNF WITGNCVKGD  120
ACPFLHSWFH GVDFAMLAKL EGHKKGVSGI ALPSGSTKLY SGSKDGTARI WDCHTGQCDQ  180
VINLGGEVGC FTCEGPWVFV GLPNTVKAYN IQNGASYNIS GPVGQVHALE VANDMLFAGA  240
QDGTILVWKG GSEADPFQMA SPLRGHTQGV VSLTVGRNRL YSGSIDQTIR VWDLHTLECV  300
QELVGHTDVV MSLLCWDQYL ISCSLDATIK IWGVATEGGS LEVGYTHHED HVWYSCTVRD  360
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211373488322Tako8
6g6n_A2e-211373488322Tako8
6g6n_B2e-211373488322Tako8
6g6n_C2e-211373488322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056979.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-119C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A059C7L20.0A0A059C7L2_EUCGR; Uncharacterized protein
STRINGXP_010056979.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-119zinc finger WD40 repeat protein 1