PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02478.1.p
Common NameEUGRSUZ_E02478, LOC104444882
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 441aa    MW: 47700 Da    PI: 7.6301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02478.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06104127226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++lC+f+   G C  Gd C+F H+
  Eucgr.E02478.1.p 104 QEKLCNFWIT-GNCVKGDACPFLHS 127
                       578***9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3612450IPR000571Zinc finger, CCCH-type
SMARTSM003560.00172549IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5104127IPR000571Zinc finger, CCCH-type
SMARTSM003203.1E-6133172IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.3E-16134234IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.66E-47134428IPR017986WD40-repeat-containing domain
PfamPF004002.3E-5137172IPR001680WD40 repeat
PROSITE profilePS5008213.349140181IPR001680WD40 repeat
PROSITE profilePS5029422.069140342IPR017986WD40-repeat-containing domain
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-7159173IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6212249IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.3E-31235425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.4E-4256293IPR001680WD40 repeat
PfamPF004000.0038262293IPR001680WD40 repeat
PROSITE profilePS5008213.215263302IPR001680WD40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-7280294IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4296333IPR001680WD40 repeat
PfamPF004000.028298332IPR001680WD40 repeat
PRINTSPR003201.4E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM0032048338381IPR001680WD40 repeat
SMARTSM003207.3384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAIKTARSTV GWQQNSAAHY KAPTSRRRVC TYWLAGKCNR NPCRFSHDAS LLGNVYHRAA  60
KQSSHMAEDF PGRKGPESSP VNSASSTSGE RSESSTNKNP LKPQEKLCNF WITGNCVKGD  120
ACPFLHSWFH GGNFAMLAKL EGHKKGVSGI ALPSGSTKLY SGSKDGTARI WDCHTGQCDQ  180
VINLGGEVGC FTCEGPWVFV GLPNTVKAYN IQNGASYNIS GPVGQVHALE VANDMLFAGA  240
QDGTILVWKG GSEADPFQMA APLRGHTKGV VSLTVGRDRL YSGSIDQTIR VWDLHTLECV  300
QELVGHTDVV MSLLCWDQYL ISCSLDATIK VWGVATEGGS LEVGFTHHED HGILALSGTI  360
DTGGKPVLLC ACLDNTVRLY ELPSFTERGK IFSRREVRTL QMAPGGLFFT GDAAGTLTVW  420
NWLDSPKSQK EQLPQPMESC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-211374218323Tako8
6g6n_A1e-211374218323Tako8
6g6n_B1e-211374218323Tako8
6g6n_C1e-211374218323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02478.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056961.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-154C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A059C7I30.0A0A059C7I3_EUCGR; Uncharacterized protein
STRINGXP_010056961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-155C3H family protein