PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01600.3.p | ||||||||
Common Name | EUGRSUZ_E01600, LOC104444449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 258aa MW: 26716.6 Da PI: 7.7744 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 72.2 | 9.2e-23 | 209 | 256 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+egC+adl++ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsr Eucgr.E01600.3.p 209 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAAAVIAGGLTQRFCQQCSR 256 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.2E-24 | 203 | 256 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.29 | 207 | 257 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-22 | 208 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-16 | 210 | 256 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MLEYEWGLGA NPSQILISAD DPTHDPTQTH HHPHHHHPML DHYAVSPHQS FPSSSAAAAA 60 THILSSPNAF SPFAPPHHQQ PPPIAAAHIH NAHHPLFDPR VFGGASYPPP ANPFALDCFG 120 GGGGGGGGGG NGGGFLMVPK SEDATGARPS PAAELAAARI GLNLGGRTYF ASSVAAEDDF 180 VSRLYRRPSA GRAGGEGGGV GSAAANAPRC QAEGCNADLT HAKHYHRRHK VCEFHSKAAA 240 VIAGGLTQRF CQQCSRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-18 | 210 | 256 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056422.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A059C3V8 | 0.0 | A0A059C3V8_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059C454 | 0.0 | A0A059C454_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059C4M7 | 0.0 | A0A059C4M7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056422.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-39 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01600.3.p |
Entrez Gene | 104444449 |