PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00096.1.p
Common NameEUGRSUZ_E00096, LOC104443402
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 212aa    MW: 23384.9 Da    PI: 9.8143
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.5e-32132190159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Eucgr.E00096.1.p 132 LDDGFRWRKYGQKAVKNSVHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGIHNHP 190
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-33118190IPR003657WRKY domain
SuperFamilySSF1182903.66E-28126191IPR003657WRKY domain
PROSITE profilePS5081127.737127192IPR003657WRKY domain
SMARTSM007741.5E-37132191IPR003657WRKY domain
PfamPF031061.3E-25133190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDSLDRPPPL PPVLPPLPNS PYLFASPPSL LSSSLLPPLI DTSAPAQALA LPSSSSSLDI  60
DWISLLSGQP GGLPENVPMA LMENAPMTTI YPGNGGVADR SDGDIKKKVT NRTRKPTRPR  120
IAFQTRSVDD ILDDGFRWRK YGQKAVKNSV HPRSYYRCTH HTCNVKKQVQ RLAKDTSIVV  180
TTYEGIHNHP CEKLMETLTP LLKQMQFLSR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23122189774Probable WRKY transcription factor 4
2ayd_A2e-23120189271WRKY transcription factor 1
2lex_A1e-23122189774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00096.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055075.11e-155PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS31e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A059C0121e-153A0A059C012_EUCGR; Uncharacterized protein
STRINGXP_010055075.11e-154(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-57WRKY DNA-binding protein 24