PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02271.1.p
Common NameEUGRSUZ_D02271, LOC104442086
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 304aa    MW: 33559.8 Da    PI: 5.987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+lv++++q G g+W++ ++  g+ R++k+c++rw +yl
  Eucgr.D02271.1.p 14 KGPWTPEEDEILVEYIRQNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding50.64.4e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Eucgr.D02271.1.p  67 RGPFTPEEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24563IPR009057Homeodomain-like
PROSITE profilePS5129419.249961IPR017930Myb domain
SuperFamilySSF466891.35E-3011108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-161461IPR001005SANT/Myb domain
CDDcd001671.83E-111661No hitNo description
PROSITE profilePS5129425.70962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2664116IPR009057Homeodomain-like
SMARTSM007177.3E-1566114IPR001005SANT/Myb domain
PfamPF002494.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.72E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRTPCCDKK DLKKGPWTPE EDEILVEYIR QNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEEKLVIQ LHGILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHEPFL TRGPMTNSPA STVTRHMAQW ESARLEAEAR LSRESNLFNP LPLQKADADH  180
FLRLWNSEVG ESFRKINMEM GRSPVSPASS CAKCESNSAI SAEMGPSLGG SAAVTNDGDE  240
DKECETYKSY FQQMAAGTES SGSSALEDSS DTALQLLLDF PINNDISFLG GDIDQYASSS  300
GLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02271.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053687.10.0PREDICTED: myb-related protein 308
SwissprotQ9M2D91e-127MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059CI440.0A0A059CI44_EUCGR; Uncharacterized protein
STRINGXP_010053687.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-126myb domain protein 17