PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01939.1.p
Common NameEUGRSUZ_D01939, LOC104441818
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23744.3 Da    PI: 9.8816
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01939.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.9e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Eucgr.D01939.1.p  9 KRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
                      79***********************************************96 PP
2K-box66.49.7e-2379170899
             K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +++e  +++++ +   ++k+ie  + + R+llGe+L+s+s++eLqq e+qLe+sl+kiR++Kn+l++e+ie+l+  e++l ee+++L +++e
  Eucgr.D01939.1.p  79 KTAEISMQHSKGDTLDMEKKIEHFEISRRRLLGEGLDSCSVEELQQTENQLERSLTKIRARKNHLIREHIERLKAEERKLLEEKRKLLQEIE 170
                       467778999999****************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-31323IPR002100Transcription factor, MADS-box
CDDcd002659.22E-41371No hitNo description
SuperFamilySSF554551.01E-32372IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.26185175IPR002487Transcription factor, K-box
PfamPF014868.2E-2185169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVRGKTQMKR IENDTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS  60
SLSKTIEKYQ KRAKDMGAKT AEISMQHSKG DTLDMEKKIE HFEISRRRLL GEGLDSCSVE  120
ELQQTENQLE RSLTKIRARK NHLIREHIER LKAEERKLLE EKRKLLQEIE CGKGLTPVSS  180
EPPREEIRAE SMDVETELFI GPPKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-20186186MEF2 CHIMERA
6bz1_B5e-20186186MEF2 CHIMERA
6bz1_C5e-20186186MEF2 CHIMERA
6bz1_D5e-20186186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01939.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0866420.0AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053361.11e-146PREDICTED: agamous-like MADS-box protein AGL19
SwissprotO827435e-80AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A059CHI31e-145A0A059CHI3_EUCGR; Uncharacterized protein
STRINGXP_010053361.11e-146(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.19e-73AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]