PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.D00627.1.p | ||||||||
Common Name | EUGRSUZ_D00627, LOC104441018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 258aa MW: 29766.1 Da PI: 6.7978 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98.7 | 5.6e-31 | 67 | 151 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 ++++++ +++isw+++g+ fvv+ + ef++++LpkyFkh+nf+SF+RQLn+YgFkk+++++ weFkh+ F+kg ++ l +i rkk Eucgr.D00627.1.p 67 MMKKKKKRKMISWNKEGSGFVVWCPAEFSEHMLPKYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKHDRFHKGCRHRLAEITRKK 150 88999****************************************************9998.........*********************98 PP X CS HSF_DNA-bind 102 s 102 Eucgr.D00627.1.p 151 C 151 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.8E-31 | 23 | 143 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.9E-33 | 27 | 149 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.72E-23 | 67 | 149 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-27 | 67 | 149 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAAREEVSEQ NSNLQSTSRS PSPRTRGPAP FLLKTFDLLE EAGGDDLGEE EEEEEEDDDD 60 DGDGEGMMKK KKKRKMISWN KEGSGFVVWC PAEFSEHMLP KYFKHNNFSS FIRQLNTYGF 120 KKTSSKRWEF KHDRFHKGCR HRLAEITRKK CEPSVFPQFL RPSKDHHKNS NNSSSSNGNA 180 QTSASFLEED GRVQLMEENK NLRREKMELE TQIAQFKAIE MKLLDCLGQY VGNNPHPHHH 240 HEKIMSYKSN FGGYGEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-12 | 76 | 149 | 45 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-12 | 76 | 149 | 45 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-12 | 76 | 149 | 45 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 74 | KKKKKRK |
2 | 68 | 75 | KKKKKRKM |
3 | 69 | 74 | KKKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.D00627.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052317.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a | ||||
TrEMBL | A0A059CCQ3 | 0.0 | A0A059CCQ3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052316.1 | 1e-141 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16597 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 5e-34 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.D00627.1.p |
Entrez Gene | 104441018 |