PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.D00044.1.p | ||||||||
Common Name | EUGRSUZ_D00044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28053.8 Da PI: 6.9043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.8e-15 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lv ++k++G +W+ a+ g+ Rt+k+c++rw +yl Eucgr.D00044.1.p 18 KGAWSAEEDQKLVAYIKRYGIWNWTHMAEPAGLARTGKSCRLRWMNYL 65 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.7e-16 | 72 | 114 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T+eE+e+++++++ lG++ W++Ia+++ gRt++++k++w++ Eucgr.D00044.1.p 72 GNITQEEEEIIINLHRVLGNR-WASIASRLS-GRTDNEIKNYWNT 114 678******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.12 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-11 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 23.676 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-14 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 73 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MARFPRVDKS NSKKTVKKGA WSAEEDQKLV AYIKRYGIWN WTHMAEPAGL ARTGKSCRLR 60 WMNYLRPNIK HGNITQEEEE IIINLHRVLG NRWASIASRL SGRTDNEIKN YWNTRLKKRF 120 LMENLQMPTA WDVKVNSSHN DPLSCQDSSI ALIDATKAQN LGSACGIDRV DETLVNGLVS 180 PGNKIDKVEE NIWEQLVALK DLCILEDFEG TCSNSGTKSP ASECMYSEPM YFGESYEDFL 240 IDLWGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 18 | 120 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.D00044.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030551.1 | 1e-160 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A059CB38 | 0.0 | A0A059CB38_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030551.1 | 1e-160 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-43 | myb domain protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.D00044.1.p |