PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03699.1.p | ||||||||
Common Name | EUGRSUZ_C03699, LOC104438195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 27346.6 Da PI: 7.3624 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd lv++++++G+g +W + +r+ g++R++k+c++rw++yl Eucgr.C03699.1.p 14 RGPWSPEEDATLVNYINKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + ++ G++ W+ Ia++++ gRt++++k++w++ Eucgr.C03699.1.p 69 GGFTEEEDHVICTLFFTIGSR-WSVIASKLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.363 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.66E-10 | 16 | 62 | No hit | No description |
SMART | SM00717 | 3.8E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.101 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.2E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVRAPCCDKA NVKRGPWSPE EDATLVNYIN KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDHVIC TLFFTIGSRW SVIASKLPGR TDNDVKNYWN TKLKKKLMKQ 120 LASLKTVPES NFDYQVCAQN SASIDPETKN REYAANSMGF PKQNFNPGIP TSNSSLLCPP 180 SLTEVSDFSH VPSSTPEVSS HSDSCSVVMK SEYSGSANGS SEQDQVLLDF DFDSMLNDFG 240 FQDQSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03699.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049592.1 | 0.0 | PREDICTED: transcription factor MYB36 | ||||
Swissprot | Q9FKL2 | 1e-70 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A059CV82 | 0.0 | A0A059CV82_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049592.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-73 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03699.1.p |
Entrez Gene | 104438195 |
Publications ? help Back to Top | |||
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