PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03293.2.p
Common NameEUGRSUZ_C03293
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 1119aa    MW: 124748 Da    PI: 6.7666
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03293.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23126227199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++       ++++++ +lt +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Eucgr.C03293.2.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfTMQPPCQ-ELTARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RD 215
                       99*****************************97777785.*************************************************..45 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Eucgr.C03293.2.p 216 EKSQLLLGIRRA 227
                       677789999997 PP
2Auxin_resp1224.4e-40252334183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdld+vrW+nS+Wr+L+
  Eucgr.C03293.2.p 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAFYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDSVRWKNSQWRNLQ 334
                       79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-20125226No hitNo description
PROSITE profilePS5086312.139126228IPR003340B3 DNA binding domain
SMARTSM010191.2E-23126228IPR003340B3 DNA binding domain
PfamPF023621.2E-21126227IPR003340B3 DNA binding domain
PfamPF065071.8E-35252334IPR010525Auxin response factor
PfamPF023091.0E-89951083IPR033389AUX/IAA domain
PROSITE profilePS5174525.8929971082IPR000270PB1 domain
SuperFamilySSF542772.81E-710121075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MKVPSNGFLA GGGEGEKKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TTCVPSYPNL PPKLICMLHN VTLHADLETD EVYAQMTLQP VSKYDQEALL ASDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFTMQ PPCQELTARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAFYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DSVRWKNSQW RNLQVGWDES TAGERPSRVS MWEIEPVVTP  360
FYICPPPFFR PKFPRQPDDE SDVENAFKRA MPWLGDEFGI KDTPSSIFPG LSLMQWMSMQ  420
QSNPLQATQS GLLPPMLSST GLHNNLGIDD PSKLLSFQAP TQGLQFNKTN PQNQVSQLLQ  480
PSMAWSQQHQ LQQLLQNPLG HQQQQQQQQL QRQQQQQLQS SQQQTPQQLP QSQPPQQQPL  540
QPQQFQQQSP HQPSQQTSQQ QQVVQTPLGN GGVVTSNQFP SQMVQQSALY SQLQQQQQQQ  600
QQQLLTTQNA PSQPSILGIN KVPVHPTSVS QDSKFQSQME QQQPSLLQRH QQQPMQMQPS  660
SLLQQSWTQR AQPQLQPQLP QVLQQNLSEQ QIQLQLQKLQ QQQQHQQQLP NPAGPLLQPQ  720
LQQQQQQQQQ HQQQVVPQNQ MPLSQQQLVC NSLPTPALLP PQPSNPNHLY GQQKALTAVR  780
ALSGLTDGDG PSCSTSPSTN NCHIPSSNFL CKNQVAQPVL VGDSSLIEPM NHLIQEHQMK  840
PDARIKHELP SSKGHDQLKY KASVTDPLEV SSSATSYCLD ATAAQQNFSL PTFCLDSDVQ  900
SQPRNTSPFA ANIDNLAADT LLSRGFDSQK DLQNLLSTYG GGTPRDIETE LSTAAISSQS  960
FGVPSMPFKA GCSNDVAIND TGVLNGGIWS SQTQRMRTYT KVQKRGSVGR SIDITRYRGY  1020
DELRRDLARM FGIEGQLEDP HRTDWKLVYM DHENDILLVG DDPWEEFVTC VQSVKILSST  1080
EVQQMSLDGD LGLVPIPNQA SSGTDSGNAW RGDILISR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691635547388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03293.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049375.10.0PREDICTED: auxin response factor 19 isoform X4
TrEMBLA0A059CVH00.0A0A059CVH0_EUCGR; Auxin response factor
STRINGXP_010049370.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19