PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C02333.1.p | ||||||||
Common Name | EUGRSUZ_C02333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | AP2 | ||||||||
Protein Properties | Length: 537aa MW: 58420.8 Da PI: 7.2036 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.4e-11 | 160 | 216 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Eucgr.C02333.1.p 160 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 216 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 47.2 | 5.7e-15 | 259 | 310 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Eucgr.C02333.1.p 259 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 310 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.58E-17 | 160 | 226 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-14 | 160 | 225 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 160 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-11 | 161 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.174 | 161 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-22 | 161 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 162 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 259 | 320 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-10 | 259 | 310 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-23 | 259 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 260 | 319 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 260 | 324 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 260 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 300 | 320 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MDSSSPPPPH HNWLGFSLSN HHHTPHHLSL FEAFNPATGG VVDRDEDARP HGHGPTDLSM 60 FSGGPKLEDF LGGSATAGGA QPLLAHFAAA PEGHHPPVGA AEAYDSELKT IAASFLRGYT 120 AEQTDVVARK QQQQQQQQPL ASSEEAGAKK AVDTFGQRTS IYRGVTRHRW TGRYEAHLWD 180 NSCRREGQSR KGRQGGYDKE DKAARAYDLA ALKYWGPTTT TNFPIVSYEK ELEEMKHMTR 240 QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA 300 YDIAAIKFRG LNAVTNFDMS RYDVKSIMSS NLPIGGMSGK SKNSSESTSD SRSIEGSRSD 360 DRDLSSASSR TFASQPPPMS TLSFAIPVKA DPSSDCWNIL EYHQNPNNPL NNAKLISAGG 420 GPSPSPAFYQ SFENNQNAFG ADFSGSQSSN NSGYFNGGGY GGNIHQQHHQ EQESNHENGN 480 TGSNSIPYAT PIALYSSGNH ENGNGYNSWI ASTGLHSFQT AKQNLAVFQT PIFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C02333.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048645.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-161 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A059CSR6 | 0.0 | A0A059CSR6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048645.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-144 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C02333.1.p |
Publications ? help Back to Top | |||
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