PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00556.1.p
Common NameEUGRSUZ_C00556
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 357aa    MW: 37978.1 Da    PI: 6.0035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00556.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.9e-18272306135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C+t kTp+WR gp g+ktLCnaCG++y++ gl
  Eucgr.C00556.1.p 272 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSAGL 306
                       99*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-7125355IPR016679Transcription factor, GATA, plant
SMARTSM004017.4E-19266316IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.701266322IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14270329No hitNo description
Gene3DG3DSA:3.30.50.105.3E-15270305IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.07E-14271318No hitNo description
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
PfamPF003205.8E-16272306IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEAPEIKAEA PEFFQPGFCS PQFAPERRHS LDGKAGGGDP FMVDDLLDFS TTDDAVGGGG  60
CGGGGGDGAF DNVTGSSTDS NVTAMDSCNS SFSGYDPNFG DGIGGCHRGF AEGHFASDLC  120
VPYDDLAELE WLSNFAEESF SSEDLQKLQL ISGMKARPDA AAAYETTARE FQPEPNRGGP  180
IFHPDMSVPA KARSKRSRAA PGSWSSRLLV LSQSDPAPDD DGAGGPGGVP RPVAGKKTVR  240
AAPKKKQPGL DGPDRPDGPD GPDVGGGEVR RCLHCQTDKT PQWRTGPMGP KTLCNACGVR  300
YKSAGLVPEY RPAASPTFVL TRHSNSHRKV LELRRQKEMM RAQQLHQQQQ HCSVHY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00556.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047251.10.0PREDICTED: GATA transcription factor 12
SwissprotO826322e-78GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A059CMG30.0A0A059CMG3_EUCGR; GATA transcription factor
STRINGXP_010047251.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-69GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]