PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00358.1.p
Common NameEUGRSUZ_C00358, LOC104436099
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 343aa    MW: 38642.8 Da    PI: 8.9241
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00358.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.3e-124895154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      s++kGV +   +g W A+I+       + +r++lg+f + eeAa a++ a+ kl+
  Eucgr.C00358.1.p 48 SKFKGVVQQQ-NGHWGAQIYA------NhQRIWLGTFKSDEEAAMAYDSAAIKLR 95
                      79****9888.8******999......44************************98 PP
2B383.81.5e-26171274185
                       EEEE-..-HHHHTT-EE--HHH.HTT........---................--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkke..............esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                       f+k+ltpsdv+k++rlv+pkkfa ++        +   +               +++l+++d+s rsW+++++y+ +s ++v+t+GW++Fvk+
  Eucgr.C00358.1.p 171 FQKELTPSDVGKLNRLVIPKKFAIKYlprisggsE---AgkddaplqlrtlglDDVQLVFYDRSMRSWKFRYCYWSSSHSFVFTRGWNRFVKE 260
                       99****************************96660...3444556666666776788************************************ PP

                       HT--TT-EEEEEE- CS
                B3  72 ngLkegDfvvFkld 85 
                       ++L+++D+v F++ 
  Eucgr.C00358.1.p 261 KELRANDTVAFYMC 274
                       ***********954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-2448106No hitNo description
SuperFamilySSF541713.53E-1648106IPR016177DNA-binding domain
PfamPF008471.7E-74895IPR001471AP2/ERF domain
SMARTSM003808.4E-2249110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1749104IPR001471AP2/ERF domain
PROSITE profilePS5103217.51749104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-30168277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-26170277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-25170273No hitNo description
SMARTSM010191.7E-22171282IPR003340B3 DNA binding domain
PfamPF023621.6E-23171274IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379171293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSMEEETLSV ISNSDRNVLA EGSDSNDSAL PSRLTTKRAR QTPNGATSKF KGVVQQQNGH  60
WGAQIYANHQ RIWLGTFKSD EEAAMAYDSA AIKLRSGDPH RNFPWSKLSV EELNFQSCYS  120
TEAVLTMIKD GTYQSKFTDF VRARTNGPHQ EAGLDLVLAH PNGGLMCRQL FQKELTPSDV  180
GKLNRLVIPK KFAIKYLPRI SGGSEAGKDD APLQLRTLGL DDVQLVFYDR SMRSWKFRYC  240
YWSSSHSFVF TRGWNRFVKE KELRANDTVA FYMCEYREPR KEGRTFCMID VQQRDKNGGG  300
LGEKGLGEEA KGSIEIMPVE GEKKDESKTM KKGLKIFGVE IC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2517027113100DNA-binding protein RAV1
5os9_A6e-251692986117B3 domain-containing transcription factor NGA1
5os9_B6e-251692986117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00358.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047119.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_010047121.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-106RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A059CLZ10.0A0A059CLZ1_EUCGR; Uncharacterized protein
STRINGXP_010047119.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-107RAV family protein