PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03165.1.p
Common NameEUGRSUZ_B03165, LOC104435594
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 328aa    MW: 34615 Da    PI: 8.2229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03165.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32179236259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers+edp +v++tYeg+H h+
  Eucgr.B03165.1.p 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTNSKCTVKKRVERSSEDPAIVVTTYEGQHCHH 236
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32163236IPR003657WRKY domain
SuperFamilySSF1182906.15E-28170236IPR003657WRKY domain
PROSITE profilePS5081130.021173238IPR003657WRKY domain
SMARTSM007741.1E-37178237IPR003657WRKY domain
PfamPF031065.6E-25179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDANGDQHRS DPFADFTAIS AWPHLGPDPD GRYFFGGERD GAALGEFGWS LPMGGSGGCG  60
GGGGSFGARD CFGDVDQIIG AGAGGGQVSA GAGSSSAPPP PPRGSDAASA VGGTAGGDAS  120
TSNRSASSES SEDPPERSAA SGESLLAPEK PNKVRKKGQK RIKQPRFAFM TKSEVDHLED  180
GYRWRKYGQK AVKNSPYPRS YYRCTNSKCT VKKRVERSSE DPAIVVTTYE GQHCHHSAGY  240
LRSSTISHEA TFGRHFAYPP SQIYHPTRLH VPIETSPYNL NTHRAPTSSG DSQRLLTSSG  300
ERGEPSGVNQ LLSTEGLLAD VVPPKMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25169235874Probable WRKY transcription factor 4
2lex_A1e-25169235874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03165.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046618.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLA0A059D7G40.0A0A059D7G4_EUCGR; Uncharacterized protein
STRINGXP_010046618.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-54WRKY DNA-binding protein 57