PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02453.1.p
Common NameEUGRSUZ_B02453, LOC104432834
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 459aa    MW: 49950.1 Da    PI: 5.9179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02453.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-17136184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Eucgr.B02453.1.p 136 EFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 184
                       69******************......55************************997 PP
2AP240.75.8e-13227277155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ +++g
  Eucgr.B02453.1.p 227 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDGEVEAARAYDKAAIRYNG 277
                       89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-11135191No hitNo description
SMARTSM003806.8E-31136198IPR001471AP2/ERF domain
PROSITE profilePS5103217.319136192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-16136193IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-15136193IPR016177DNA-binding domain
PfamPF008476.5E-9137184IPR001471AP2/ERF domain
CDDcd000181.77E-24227287No hitNo description
SuperFamilySSF541711.5E-16227286IPR016177DNA-binding domain
PfamPF008473.6E-8227277IPR001471AP2/ERF domain
PROSITE profilePS5103215.659228285IPR001471AP2/ERF domain
SMARTSM003802.7E-29228291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-15228285IPR001471AP2/ERF domain
PRINTSPR003673.4E-6229240IPR001471AP2/ERF domain
PRINTSPR003673.4E-6267287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNLNVLS AESSYQEEKL SDVSGNQMDE SGTSNSSIVN ADAGDDESSS ARAAGDVHTF  60
QFGIVKADGG GNDAVETKEL FPLKEEECSP GEMPMELSFG NGGSGSGGGS HARVMPQQQS  120
QQAKKSRRGP KSKSSEFRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAQA AARAYDRAAI  180
KFRGVDADIN FHMSDYEEDL KQMKSLSKED FVHILRRQST GFSRGSSKYR GVTLHKCGRW  240
EARMGQFLGK KYIYLGLFDG EVEAARAYDK AAIRYNGREA VTNFEPSSYE GQMIPVAMNE  300
GSDHNLELNL GMSAPSFGSS VKDADEHLPC HAETFSGIPN FASAVLGDSA LRGLSMTSHH  360
HSSQNCVYPR FFSNEEKDTE QRNEVPSSQG LHWVWPMRDQ VSTSAASVPP SSTAASSGFP  420
YSVPPYSAAM VASPLSRFPP PYTVASNSSR CNDQMTSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02453.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043686.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4431e-102AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A059D5G00.0A0A059D5G0_EUCGR; Uncharacterized protein
STRINGXP_010043686.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-105related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]