PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02396.1.p
Common NameEUGRSUZ_B02396, LOC104432762
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 173aa    MW: 18849.9 Da    PI: 10.0813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000844365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ Fs+   L  H  +H
  Eucgr.B02396.1.p 43 FTCKTCNREFSSFQALGGHRASH 65
                      89**********99999998887 PP
2zf-C2H211.30.001192114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+Cg  F+    L  H+r+H
  Eucgr.B02396.1.p  92 HECPICGLDFPIGQALGGHMRRH 114
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-841114No hitNo description
PfamPF139123.0E-114367IPR007087Zinc finger, C2H2
SMARTSM003550.194365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1384370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139127.8E-1091116IPR007087Zinc finger, C2H2
SMARTSM003550.3392114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKRDREDME VEALAVANSL MLLSRVGQST DSNRKWQPTE RMFTCKTCNR EFSSFQALGG  60
HRASHKKPKL ISGDLLRLGH EADSSPAKPK THECPICGLD FPIGQALGGH MRRHRAAMLE  120
SLAAAATKPV PVLKKSNSKR VTGLDLNSSP MEDDLTLRLG KVAPPLVLDL VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801930.0KC480193.1 Eucalyptus grandis C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043587.11e-124PREDICTED: zinc finger protein ZAT12
TrEMBLA0A059D5481e-123A0A059D548_EUCGR; Uncharacterized protein
STRINGXP_010043587.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-38C2H2 family protein