PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02390.1.p
Common NameEUGRSUZ_B02390
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 179aa    MW: 19349.5 Da    PI: 9.4596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000698120123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F+    L  H+r+H
  Eucgr.B02390.1.p  98 HECSICGLDFPMGQALGGHMRRH 120
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.53E-847120No hitNo description
PfamPF139121.4E-114973IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0554976IPR007087Zinc finger, C2H2
SMARTSM003550.464971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139122.1E-1197122IPR007087Zinc finger, C2H2
PROSITE profilePS501578.80898120IPR007087Zinc finger, C2H2
SMARTSM003550.3298120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
LPEMVKRDRE DTEVEALARV NCLMLLSRVG ESTDSASPDR KSRPTERMFA CKTCNREFSS  60
FQALGGHKAS HKKPKLISGD LFHLGHAADS SPAKPKTHEC SICGLDFPMG QALGGHMRRH  120
RAAMLESLAA AAAKPVPVLK KSNSKRVTGL DLNSLPMEDD LTLRLGKVAP PLVLDLVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801890.0KC480189.1 Eucalyptus grandis C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043581.11e-124PREDICTED: zinc finger protein ZAT8
TrEMBLA0A059D4D01e-125A0A059D4D0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010043581.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-35C2H2 family protein