PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02351.1.p
Common NameEUGRSUZ_B02351, LOC104432726
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 650aa    MW: 72502.5 Da    PI: 8.3953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02351.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07557606147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Eucgr.B02351.1.p 557 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 606
                       678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.15E-6364441IPR029071Ubiquitin-related domain
PROSITE profilePS500538.611370440IPR000626Ubiquitin domain
PROSITE profilePS5129415.654552611IPR017930Myb domain
SMARTSM007173.3E-7556609IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-10557607IPR009057Homeodomain-like
CDDcd116602.13E-16558608No hitNo description
SuperFamilySSF466891.96E-15558639IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVLNRRLEYG FNGYQVPAMP RGTRSARRRN SIKKNGEDNK MHAFDLLATL AGKLLVGNSS  60
SSSSSNSSTK KDQFPVTDST GIEEGCHNQC KQLELQLCDQ GSCGRSMLDS QLESQQHEDP  120
KLSLEDIQHP VIGSTDCSER LGTDEDKRND ETGGHAVLGT LMSTDSKLED DTQNEIKVEQ  180
LYSEKPPNDN GAVMYSLREP VVWDAKPLTQ VSLESGAAAS FPENKDCISL DCLSPARNVE  240
VVGRDDDEKS SGCTHPIPIK KSFRHIGDRR IRKVWASRHW KVHPRTGVNF KADYKDKSSY  300
YKRQRSQRNY PFKKRKIFDI DFESYSDKEI SSNATVYPPE NHTDGDVSAK RKSPPASGQH  360
LSYQSTDSHV KLRIESFTVP ELFIEIPETA TIGSLKRAVM EAVSGVLGSE LRVGVLLQGK  420
KVGDDSKTLL QTGISHDNLL SSLGFALEPD PLYTSASPKV SSLFPCDVSQ PLIRYPTGPN  480
DSQERTHDTL PEHQETNLPI VVENDCDLAT SPVGVLKKGS TQSKALIPVS SMNVEALAVV  540
PVHRKSKRSE FAQRRIRRPF SVTEVEALVQ AVEKLGTGRW RDVKLRAFDS AKHRTYVDLK  600
DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSQH QAKQQLKHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565416471107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306315QRNYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02351.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043540.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-126TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A059D5700.0A0A059D570_EUCGR; Uncharacterized protein
STRINGXP_010043540.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-124TRF-like 2