PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00945.1.p
Common NameEUGRSUZ_B00945
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 368aa    MW: 41063.6 Da    PI: 7.9842
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00945.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2179138357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++t+eql++Leel+++ +r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Eucgr.B00945.1.p  79 SRWNPTPEQLRTLEELYRRgTRTPNADQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 138
                       7*****************99**************************************97 PP
2Wus_type_Homeobox116.61.2e-3778140365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtPn+++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
   Eucgr.B00945.1.p  78 SSRWNPTPEQLRTLEELYRRGTRTPNADQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.3E-476143IPR001356Homeobox domain
SuperFamilySSF466893.68E-1279144IPR009057Homeodomain-like
PfamPF000462.6E-1979138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-879138IPR009057Homeodomain-like
CDDcd000862.59E-680140No hitNo description
PROSITE profilePS5007111.06284139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGCHDDGDLY MAESFNGRKL RPLMPRPVTN PSPNNGGTNA APPCLSRIHG ADILALNHHL  60
ATMAEQKREF NSPQVVVSSR WNPTPEQLRT LEELYRRGTR TPNADQIQQI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQMEAGPEE PNRDAEESER KETGASRTGL EVEETKNNWA  180
PPINCSTLAE EPAGATTQKA PKAGSAATLA ERRTRSSSSD QWIKFDDGEF QWTRRHSASN  240
FLERNATWQM MQLPSCPHPT HLINTTAPST VAPPATPSLL SAAARASSMD PNKILKAHEL  300
RSFFMSSPFR DDHDLASGGG GGGRECEEDS QTLQLFPLRS GDDFDGKSAS PPSHHQHQFF  360
EFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00945.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9640220.0KF964022.1 Eucalyptus grandis isolate EG5 WOX1 (WOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033710.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A059D0E10.0A0A059D0E1_EUCGR; Uncharacterized protein
STRINGXP_010033710.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-57WUSCHEL related homeobox 1