PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00731.1.p

Common Name

EUGRSUZ_B00731, LOC104421695

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 262aa MW: 29385.9 Da PI: 6.1041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00731.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.8e-07	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +i++++ L++l+P + + + a +L + ++Y+ksLq Eucgr.B00731.1.p 157 SHSLAERVRRGKIKERLRYLQDLVPGC----YQTMGMAVMLDEIINYVKSLQ 204 8***********************9....477889999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-16	151	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.33E-9	151	208	No hit	No description
PROSITE profile	PS50888	14.831	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-16	153	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-6	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAEFARELQC FQPFSSLLDI DMVEPTNDFT GSNPSAINSH PSSDFHSSAI LSSDNPLFLQ 60 PVVPDFPSNW ANVFPGIFHP YEQNLAPLSA GDDSYEERKR KVSGLPAESS SGIVSSPLQK 120 SDTESLGKAK RRKRSEKEEK PKEVVHVRAR RGQATDSHSL AERVRRGKIK ERLRYLQDLV 180 PGCYQTMGMA VMLDEIINYV KSLQSQVEFL SMKLEAASSY YDFNSEADAI ETLQREQMYG 240 NRELESLMRI GHANFHPSSH P*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00731.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032051.1	0.0	PREDICTED: transcription factor BEE 1
Swissprot	Q8GWK7	3e-53	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A059D0Y4	0.0	A0A059D0Y4_EUCGR; Uncharacterized protein
STRING	XP_010032051.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	5e-51	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Eucgr.B00731.1.p
Entrez Gene	104421695

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]