PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00713.1.p
Common NameEUGRSUZ_B00713
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 491aa    MW: 53499.8 Da    PI: 6.349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00713.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12319364454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++K++ L  Av YI++L
  Eucgr.B00713.1.p 319 NHVEAERQRREKLNHRFYALRAVVPNV-----SKMDKSSLLSDAVSYINEL 364
                       699***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-4833207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.971315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17318378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-14318369No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16319380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-15321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00756437490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDKLIIASSS SSSLVFKPMS PTATPPPSLG LTLQQRLQLV VQSQPQWWAY AIFWQLLNHD  60
DGRLLLAWGD GHFQGSAKLT LASRSDCGKL FQALPHDPSN SRPDAAADVP APTGDVTDAE  120
WFYVMSLTRS FSAGDGIPGK ALGTGSLVWL TGARDLGSYE CDRTKEAELH GIRTLVCIPT  180
GHGVLELGSC DVIPENWGLV QRAKSLFGSD LLLPKHPPPP FQLHQDPCDI SFFDIGIIAG  240
LQESDFASHD DYEKKVKKKE PLVEGAGGKP EAPFGSCSYL VESEHSDSGS PFMAVVMTEK  300
RTPKKRGRKP GLGLDPPLNH VEAERQRREK LNHRFYALRA VVPNVSKMDK SSLLSDAVSY  360
INELKSKISD LESQMQRESK KFKQEVTDAT DNLSSTSSVD HSSPSGCGGS LLEVEVKIVG  420
CDAMIRVQSQ NANYMSARLM AVMRDLELHI HHASLSAVND LLLQDVVVRV PEGLKGEADL  480
RAALLRALEQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-31322078192Transcription factor MYC3
4rqw_B1e-31322078192Transcription factor MYC3
4rs9_A1e-31322078192Transcription factor MYC3
4yz6_A1e-31322078192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00713.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031905.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059D0V60.0A0A059D0V6_EUCGR; Uncharacterized protein
STRINGXP_010031905.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.17e-63NACL-inducible gene 1