PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00647.1.p
Common NameEUGRSUZ_B00647
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 518aa    MW: 57649.6 Da    PI: 5.3304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00647.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13466513246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                       +rW+ eE+e l ++v+++G+g+Wk+I ++     + Rt+ ++k++w++
  Eucgr.B00647.1.p 466 KRWSLEEEETLRNGVQRFGKGNWKLILHCYRhifEERTEVDLKDKWRN 513
                       69*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.612460517IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-12462515IPR009057Homeodomain-like
SuperFamilySSF466896.73E-15462516IPR009057Homeodomain-like
SMARTSM007172.2E-9464517IPR001005SANT/Myb domain
CDDcd116603.78E-19466516No hitNo description
PfamPF002492.1E-10466514IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEEIDPDISR WILEFLLRQP RLDDGAVKLA LAVLPLPDSD LRLKKSVLLR SIQSEVDAAS  60
VSEETLDALE AIEEVDRTTA ACGGGGIGGG GPPPAVSDAM REAYRAVAVE CAARFLHGRV  120
DEGGEYSRAV ERIWRGRVRR MEESAVKSGL LSPELLRWGR RVEAAMRDEG EREGVLAMNT  180
RGDAFRSVRA YLGEAWERMG PSFLEVAASR MAEDNPCREL VVVVANGRAE SRACERDDLP  240
DVRASAGPNS ERPAVRIEDD GEMPETSKPD EGLIKRKQLA RRRRSKVGVK IIDDNRETER  300
DVASRCGFDT VPSPDVNRVQ EALKSSSVEL RAAVADPLPD AIRLADSLVR NAAGSPMNFE  360
CAEAQIREDV NASDAYADQN VGPVPGGEEN HVNQSTSHQN KQCKPSLFER NSSARTYEWD  420
DTIDDSPEEP SGSDRVVLPS PRRSTVSPLR KPLTRSLKVS GRRKAKRWSL EEEETLRNGV  480
QRFGKGNWKL ILHCYRHIFE ERTEVDLKDK WRNMNRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274283KRKQLARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00647.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031230.20.0PREDICTED: uncharacterized protein LOC104421078 isoform X1
TrEMBLA0A059CZJ30.0A0A059CZJ3_EUCGR; Uncharacterized protein
STRINGXP_010029695.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-12MYB_related family protein