PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00634.2.p
Common NameEUGRSUZ_B00634
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26485.2 Da    PI: 9.2999
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00634.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs +gkl+eys+
  Eucgr.B00634.2.p  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIIFSAKGKLFEYST 59
                      79***********************************************96 PP
2K-box88.81e-2978164490
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                       ++  + e++   s++ e+akLk+++e L r+ Rh++GedL+sLslk+Lq+LeqqLe++lk+iRs+Kn+l++e+i+ lqkk ke +++
  Eucgr.B00634.2.p  78 HQVLASETESIGSWTLEHAKLKARLEVLHRNYRHFMGEDLDSLSLKDLQNLEQQLESALKHIRSRKNQLMHESISVLQKKVKEKERA 164
                       4555567778899*******************************************************************9987764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.198161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-33290IPR002100Transcription factor, MADS-box
CDDcd002652.03E-43279No hitNo description
PRINTSPR004049.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2485162IPR002487Transcription factor, K-box
PROSITE profilePS5129715.51188177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGRLQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIIFSA KGKLFEYSTD  60
SCMERILERY ERYSYSEHQV LASETESIGS WTLEHAKLKA RLEVLHRNYR HFMGEDLDSL  120
SLKDLQNLEQ QLESALKHIR SRKNQLMHES ISVLQKKVKE KERALAQQAQ WEQQDHALDS  180
PVVLPHYLPS LDINGSYQAR HNGHDDGENL TQPRAGTLLP PWMLHRLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-22174173Myocyte-specific enhancer factor 2B
1tqe_R2e-22174173Myocyte-specific enhancer factor 2B
1tqe_S2e-22174173Myocyte-specific enhancer factor 2B
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
6c9l_A2e-22174173Myocyte-specific enhancer factor 2B
6c9l_B2e-22174173Myocyte-specific enhancer factor 2B
6c9l_C2e-22174173Myocyte-specific enhancer factor 2B
6c9l_D2e-22174173Myocyte-specific enhancer factor 2B
6c9l_E2e-22174173Myocyte-specific enhancer factor 2B
6c9l_F2e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00634.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3050760.0AF305076.1 Eucalyptus globulus MADS-box protein EAP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031068.11e-165PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ424291e-106AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A059D0K91e-167A0A059D0K9_EUCGR; Uncharacterized protein
STRINGXP_010031068.11e-164(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-95AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]