PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00490.1.p
Common NameEUGRSUZ_B00490, LOC104419666
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 503aa    MW: 56361.3 Da    PI: 6.5421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13451498246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                       +rW+ eE+e l ++v+++G+g+Wk+I ++     + Rt+ ++k++w++
  Eucgr.B00490.1.p 451 KRWSLEEEETLRNGVQRFGKGNWKLILHCYRhifEERTEVDLKDKWRN 498
                       69*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.495447502IPR017930Myb domain
SMARTSM007174.7E-9449502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-12451499IPR009057Homeodomain-like
CDDcd116603.32E-19451501No hitNo description
SuperFamilySSF466896.58E-15452501IPR009057Homeodomain-like
PfamPF002492.9E-10452499IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEIDPDISRW ILEFLLRQPR LDDGAVKLAL AVLPLPDSDL RLKKSVLLRS IQSEVDAASV  60
SEETLDALEA IEEVDRTTAP PAVSDAMREA YRAVAVECAA RFLHGRVDEG GEYSRAVERI  120
WQGRVRRMEE SAVKSGLLSP ELLRWGRRVE AAMRDGGERE SVLAMNTRGD AFRSVRAYLG  180
EAWERMGPSF LEVAASRMAE DNPCRELVVT SGRVESHAGE RDDLPDVRAS TGLNSERPAV  240
RIEDDGEMPE TLRPDKGLIK RKQLARHRRS KVGVKIIHDN GETGRDIASR TRFDTVPSPD  300
VNRVQEALKS SSMELRAAVA DPLPDAIRLA NSLVRNAAGS SMNFECAEAQ IREDVNASDA  360
SAEQNVGPVP GGEENHVNQS TSHQNKQCKP SLFERNTSAR TYEWDDSIEG SPEEPSGSDR  420
VQLPSPRRSA VSPLRKPLTR SLKVSGRRKV KRWSLEEEET LRNGVQRFGK GNWKLILHCY  480
RHIFEERTEV DLKDKWRNMN RY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029695.10.0PREDICTED: telomeric repeat-binding factor 2 isoform X1
TrEMBLA0A059CZK20.0A0A059CZK2_EUCGR; Uncharacterized protein
STRINGXP_010029695.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.25e-13MYB_related family protein