PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00385.3.p

Common Name

EUGRSUZ_B00385, LOC104418764

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 269aa MW: 28981.2 Da PI: 6.6822

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00385.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.7e-12	152	199	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++YI+sLq Eucgr.B00385.3.p 152 SHSLAERARREKISERMKTLQDLVPGC----NKIIGKALVLDEIINYIQSLQ 199 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.16E-11	146	203	No hit	No description
SuperFamily	SSF47459	3.66E-18	146	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-19	148	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.075	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	152	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDAPLVNASS FSAANPSAYS LAEIWPLGGD TGIVGPGLRA GNLDGSVEES TVTEQSGSGR 60 RRRRMKDASS EDESSKMVSS SCVVGSDLNN SNGAKRAKIA GSRDENGSSK AEVEANSVAC 120 NKSSAEQSAK PSEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKT LQDLVPGCNK 180 IIGKALVLDE IINYIQSLQH QVEFLSMKLE AVNSRMDMSP AVEGFVPKDH FDGTGMMFAS 240 QAARDYLQGS QAQPDWLHMQ TGGGFKRET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00385.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028517.1	0.0	PREDICTED: transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	6e-76	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A059CZ48	0.0	A0A059CZ48_EUCGR; Uncharacterized protein
STRING	XP_010028510.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-66	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Eucgr.B00385.3.p
Entrez Gene	104418764

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]