PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02838.4.p
Common NameEUGRSUZ_A02838
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 341aa    MW: 36937 Da    PI: 8.3279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02838.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-09108130326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++lC+++ + G C yGd+C++ H+
  Eucgr.A02838.4.p 108 EKLCNYWVQ-GNCTYGDKCRYLHS 130
                       579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.553055IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7893056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8105130IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6107131IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7109128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.8E-33124334IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.2E-31129334IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.7E-5136175IPR001680WD40 repeat
PfamPF004006.8E-5140175IPR001680WD40 repeat
PROSITE profilePS5029415.584143334IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.118143184IPR001680WD40 repeat
PRINTSPR003207.0E-5162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM00320150215252IPR001680WD40 repeat
PRINTSPR003207.0E-5239253IPR020472G-protein beta WD-40 repeat
SMARTSM003205.7E-4259296IPR001680WD40 repeat
PfamPF004000.0062263296IPR001680WD40 repeat
PROSITE profilePS5008212.146266305IPR001680WD40 repeat
PRINTSPR003207.0E-5283297IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780283297IPR019775WD40 repeat, conserved site
SMARTSM003202.1299336IPR001680WD40 repeat
PfamPF004000.2301334IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDMEGNKRVF QRLSGGPSTA SDSRHHPQQQ QQQKVCFHWR AGKCTRHPCP FLHRELPAPA  60
QPLSNGGAPK RFAEDSGSQF LRRGPKFTGG SNTWGRVHGS NAVAKKTEKL CNYWVQGNCT  120
YGDKCRYLHS WSLGDCFDML TQLEGHQKVV TGIAFPSGSG NLYTGSKDET LRVWDCQSGQ  180
CAGVINLGGE IGCMISEGPW VFVGLPNLVK AYNTQSNADL SLNGPVGQVY AMVVGNGLLF  240
AGIQDGSILA WKFNAATNGF EPAASLSGHT LGVVSLVVGA NRLYSGSMDN SIRVWNLETL  300
QCMQILTDHT SVVMSVLCWD QFLLSCSLDK TIKVGLGCLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-151403348319Tako8
6g6n_A6e-151403348319Tako8
6g6n_B6e-151403348319Tako8
6g6n_C6e-151403348319Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02838.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061639.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-166C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A059DK250.0A0A059DK25_EUCGR; Uncharacterized protein
STRINGXP_010061639.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-167zinc finger WD40 repeat protein 1