PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02718.1.p
Common NameEUGRSUZ_A02718, LOC104448165
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 399aa    MW: 42496.8 Da    PI: 5.289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02718.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.6e-31185243259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers+ dp++++itY+g+H+h+
  Eucgr.A02718.1.p 185 SDPWAWRKYGQKPIKGSPFPRNYYRCSSSkGCSARKQVERSNADPNIFVITYTGDHTHP 243
                       699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-31170245IPR003657WRKY domain
SuperFamilySSF1182908.37E-27178245IPR003657WRKY domain
PROSITE profilePS5081132.524179245IPR003657WRKY domain
SMARTSM007749.4E-38184244IPR003657WRKY domain
PfamPF031064.2E-26186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAEDWDLSAL VRSCSSSSAA SASSAAAAPP EGENPLACLA SLTFEDDDKD PFGFPNLAAP  60
RNGALDELRE LYRPFYPDAD RSLSRASDFA PACGSRAPVS PKATAVPRFD RVSSAPAIGA  120
LQAPQQQPQR AARHQGLDWK VLPAQQPVSS PFPLPAMQAQ TPRSRKRKSQ QKKSVCHVTA  180
ENLSSDPWAW RKYGQKPIKG SPFPRNYYRC SSSKGCSARK QVERSNADPN IFVITYTGDH  240
THPRPTHRNS LAGSTRNKYS TSSSLQKPDS ICPAHSAPAA PCSTSSNAAS LSPTTPLTAP  300
IDEDVAHPCA LLTSEDLGMD KDSEDLVGDY EDNDDRPEEE EGEDDLLIPN VAAMSEEIFM  360
GFRELGQSPA SGDNFSSGPG RADFTRFSSA AAGAGGGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-191862461880Disease resistance protein RRS1
5w3x_D3e-191862461880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02718.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060258.10.0PREDICTED: probable WRKY transcription factor 27 isoform X1
TrEMBLA0A059DJM70.0A0A059DJM7_EUCGR; Uncharacterized protein
STRINGXP_010060258.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-52WRKY DNA-binding protein 27