PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02639.1.p
Common NameEUGRSUZ_A02639, LOC104415199
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 269aa    MW: 29983.3 Da    PI: 6.0499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02639.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.84.8e-4141381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lppGfrF Pt+eelv++yL+ k+eg++      +++vi+ +diy+++P+dLp+     ++ + ++w+fF++r++++ +g r++r t++gyWka
  Eucgr.A02639.1.p   4 LPPGFRFFPTEEELVSFYLRSKLEGTRgalhGLIDRVIPVLDIYEFNPSDLPQfagdLCRRDPEQWFFFIPRQESEYRGGRPRRLTTTGYWKA 96 
                       79************************977642234579999***********646654445677***************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg+   v+s +++ vg+k+t+vfy+grap+g kt+W m+eyr+
  Eucgr.A02639.1.p  97 TGSPGFVYS-NNHIVGVKRTMVFYTGRAPNGGKTEWKMNEYRA 138
                       *********.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-473165IPR003441NAC domain
PROSITE profilePS5100547.364165IPR003441NAC domain
PfamPF023651.7E-225137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEDLPPGFRF FPTEEELVSF YLRSKLEGTR GALHGLIDRV IPVLDIYEFN PSDLPQFAGD  60
LCRRDPEQWF FFIPRQESEY RGGRPRRLTT TGYWKATGSP GFVYSNNHIV GVKRTMVFYT  120
GRAPNGGKTE WKMNEYRAIE GEATSPQDIS VVATQEFSVC RVYKKTKTLR SFDRRPIGDI  180
IGSSSHTFQQ NTMPNDGRHP QDMTSSRRGS PPPTERASSS ADSSSASGDH GTIPSQAGGL  240
GSGIDIEMLP GESELSLQDW EQFWSGPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-33416517165NO APICAL MERISTEM PROTEIN
1ut4_B4e-33416517165NO APICAL MERISTEM PROTEIN
1ut7_A4e-33416517165NO APICAL MERISTEM PROTEIN
1ut7_B4e-33416517165NO APICAL MERISTEM PROTEIN
4dul_A4e-33416517165NAC domain-containing protein 19
4dul_B4e-33416517165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02639.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024757.10.0PREDICTED: NAC domain-containing protein 90
TrEMBLA0A059DJF00.0A0A059DJF0_EUCGR; Uncharacterized protein
STRINGXP_010024757.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-60NAC domain containing protein 90