PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02384.1.p | ||||||||
Common Name | EUGRSUZ_A02384, LOC104445262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 705aa MW: 76485.6 Da PI: 6.3279 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Eucgr.A02384.1.p 277 PCPDFRK-GACRRGDMCEYAHG 297 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.42E-15 | 55 | 136 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-17 | 56 | 136 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.157 | 57 | 164 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.12 | 57 | 87 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.8E-8 | 58 | 125 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.89E-13 | 59 | 135 | No hit | No description |
PROSITE profile | PS50088 | 11.301 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0045 | 92 | 124 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-5 | 277 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 305 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 40 | 307 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MSQLTIQTED TFASLLELAA NNDTESFGRC VERDPSSIDE IGYWYGRQKG SKQMVNMQRT 60 PLMVAATYGS VDVMRLILCL SDADVNRTCS TDKSTALHCA ASGGAVNAVD AVRLLLSAGA 120 DPSLADANGQ RPVDVIVVPP KLLSIKFALE ELLSTEGSVN EHNLRVSVAT SNSTSPPLSS 180 SPDNGSPASA NCSSPKNSKL SDAPVLYASE KKEYPVDPSL PDIKNSIYST DEFRMYSFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE 300 CWLHPAQYRT RLCKDGTSCA RRVCFFAHTE QELRPLYVST GSAVPSPRSS TSGAAAMDFA 360 AAMSLLPGSP SSVSIMSPSP FTPPMSPSAN GISHPSVAWP QQNVPTLHLP GSNLQSSRLR 420 SSLNARDIPQ EDFDLLSDYD VQQQQLLNEF SILSQQSMGA NSLNRSGRLK TLTPSNLDDL 480 FSAESSSPRY ADQALASAVF SPTHKSAVIN QFQQQQQSML SPINTTFSPK SVDHPLLQAS 540 FGVQSGRMSP RNMDPISPIS SRVSMLAQRE KQQQQLRSLS SRELGSNSAA IVGSPVGSWS 600 KWGATNGKPD WAVSADELGK LRRSNSFELG NNGEEPDLSW VQSLVKESPT EMKEKLSSTL 660 SGVPAPATSS EVPSISSQME SVDHEVLGAW LQQMQLDPLV AQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02384.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057404.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A059DIW6 | 0.0 | A0A059DIW6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057404.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02384.1.p |
Entrez Gene | 104445262 |
Publications ? help Back to Top | |||
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