PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02369.1.p

Common Name

EUGRSUZ_A02369, LOC104445108

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 298aa MW: 32528.9 Da PI: 8.3322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02369.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	231	253	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L H + H Eucgr.A02369.1.p 231 ECPQCGAKFSSVTSLIEHVEKvH 253 5*****************99888 PP
2	zf-C2H2	15.5	5e-05	269	291	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L+ H + H Eucgr.A02369.1.p 269 VCPKCSRGFRDPISLVEHVERdH 291 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	3.01E-12	4	59	No hit	No description
PROSITE profile	PS51039	7.97	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.2E-10	10	53	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.5E-13	13	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	2.6E-4	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.2E-10	91	149	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.92E-9	93	147	No hit	No description
PROSITE profile	PS51039	7.555	98	145	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	4.3E-8	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.13	101	142	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.847	230	258	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	230	253	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	4.3E-4	231	253	No hit	No description
PROSITE pattern	PS00028	0	232	253	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.2	268	291	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.746	268	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	270	291	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGTPEFPDLG KHCTVDDCKL IDFLPFTCDR CNQVFCLEHR SYIKHRCPKA DKKDVTVVIC 60 PLCAKGVRLN PDEDPNITWE SHVNIECDPS NYDKVTKKRK CPVPGCREIL TFSNTIKCKD 120 CTLDHCLKHR FGLDHNCAGP KKPDATFPFV NFLNRSKKEV SKSSGSPATS SKWSARFLNA 180 ASTVRASTEA GMAKLSNELN RTLQIAKDGV GQSGSSVSSA GSGSGSRQLE ECPQCGAKFS 240 SVTSLIEHVE KVHESSGNRA PVRKVTIDVC PKCSRGFRDP ISLVEHVERD HGGTSTA*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02369.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057230.1	0.0	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-129	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A059DIH1	0.0	A0A059DIH1_EUCGR; Uncharacterized protein
STRING	XP_010057230.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3908	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-123	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A02369.1.p
Entrez Gene	104445108

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]