PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02086.1.p
Common NameEUGRSUZ_A02086, LOC104442789
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 287aa    MW: 31230 Da    PI: 8.4918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16210244135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Eucgr.A02086.1.p 210 CTHCLSQRTPQWRAGPMGPKTLCNACGVRYKSGRL 244
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-16204258IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.189204240IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15205268No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13207242IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-11209256No hitNo description
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
PfamPF003201.5E-14210244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFCRNVSVP GDSQPKLGGF ASNSLDELFS NQKPEADVSM EWLSVFVEDC LSSSGNTLQV  60
QTLPTPSSAS VPSKTPSKPS STNLPSLHKI VVTGKARSKR KRIAAAKTKN NAFLMMPAWP  120
NHSADPLLLH QSHWLADSEL IEPKKQEQEQ EQPKKQEQEL PKTTTTNMPS SPTQCDAEEE  180
EAVESKEDHS EESGGGGGGG AGQQGTGRRC THCLSQRTPQ WRAGPMGPKT LCNACGVRYK  240
SGRLLPEYRP AKSPTFVSYL HSNSHKKVME MRSSNVSLLS PSGERR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02086.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054482.10.0PREDICTED: GATA transcription factor 2
TrEMBLA0A059DH000.0A0A059DH00_EUCGR; Uncharacterized protein
STRINGXP_010054482.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-35GATA transcription factor 9