PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01670.1.p
Common NameEUGRSUZ_A01670, LOC104439484
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 345aa    MW: 37887.8 Da    PI: 7.2447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
  Eucgr.A01670.1.p 14 KGPWSPEEDAKLKEFIDKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding39.81e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Eucgr.A01670.1.p  69 GEFTDEEDRIICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.222962IPR017930Myb domain
SuperFamilySSF466891.95E-2711109IPR009057Homeodomain-like
SMARTSM007176.3E-121364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241569IPR009057Homeodomain-like
CDDcd001671.04E-81662No hitNo description
PROSITE profilePS5129422.48763117IPR017930Myb domain
SMARTSM007178.4E-1367115IPR001005SANT/Myb domain
PfamPF002492.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2470117IPR009057Homeodomain-like
CDDcd001678.15E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEFID KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLAGL  120
PSFPHHPSLQ QRTQQNPIIA SFASHANSHA HAHPLLSSSS TPPPSSSLSP PSQSSLSNSN  180
YFTSLAGLEQ SISYYSSSPN LQQQESFLGS MRQYEASCCS SSDGSSSSNN NNNQICSLGK  240
ERDYYDFSVC GNGPGDHHHM SFQRSFCSGV DDDGQKLVLG SVGGWSQEKQ SCDQTWVAEN  300
PSDYAGLEEI KQLISSASNC SSNNNNSFFL YEGKSDPEGA VMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050853.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A059DFZ20.0A0A059DFZ2_EUCGR; Uncharacterized protein
STRINGXP_010050853.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36