PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01122.1.p
Common NameEUGRSUZ_A01122
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 391aa    MW: 41624.8 Da    PI: 9.3754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-154390148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++ Ed  l+++vk +G g+W++I r+ g+ R++k+c++rw ++l
  Eucgr.A01122.1.p 43 KGPWSAGEDAVLIEYVKAHGEGNWNAIRRKTGLMRCGKSCRLRWANHL 90
                      79******************************************9986 PP
2Myb_DNA-binding49.51e-1596139146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  Eucgr.A01122.1.p  96 KGAFSPEEEAKIIQLHARLGNR-WARMAAQLP-GRTDNEIKNFWNT 139
                       799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2743890IPR017930Myb domain
SuperFamilySSF466892.8E-2841137IPR009057Homeodomain-like
SMARTSM007174.6E-124292IPR001005SANT/Myb domain
PfamPF002495.3E-134390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-234497IPR009057Homeodomain-like
CDDcd001671.95E-104590No hitNo description
PROSITE profilePS5129424.83491145IPR017930Myb domain
SMARTSM007172.0E-1595143IPR001005SANT/Myb domain
PfamPF002497.7E-1596139IPR001005SANT/Myb domain
CDDcd001672.26E-1198139No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2598144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVINTNFDGA EKTGLEAQGE GDDRTSGGGS GGNGGQGQGA LKKGPWSAGE DAVLIEYVKA  60
HGEGNWNAIR RKTGLMRCGK SCRLRWANHL RPNLKKGAFS PEEEAKIIQL HARLGNRWAR  120
MAAQLPGRTD NEIKNFWNTR MKRRQRANEP LYPQQVQPEA TVAYDMNLQP QPVPTSSLHS  180
LLAPPPQQQP TLSANFYHSV DPLSYPKPYH HPENIMNGIL PAPSVVPPHS LSSLPPFLFD  240
LGASDLNLVL DTFNSGVASV ERKPIITDRQ RETSMAAAAT PGMTASSNSS VMGGNYMMGA  300
SAGGAASSCC ANNFEATPTS AVPSLTVPKN SVLLGALFEE ARAASSQKVK GSMVGGANVG  360
RAERGSHQGM QDNQRWENIC SAPASSLSGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-294114425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01122.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068043.10.0PREDICTED: transcriptional activator Myb
TrEMBLA0A059DDD00.0A0A059DDD0_EUCGR; Uncharacterized protein
STRINGXP_010068043.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.24e-66myb domain protein 101