PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00910.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 827aa    MW: 94993.7 Da    PI: 7.8444
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.21.3e-2388173190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g+++e++++     ++r+  +t+Cka +++k+++dg w ++++++eHnH++ 
  Eucgr.A00910.1.p  88 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRESSST----VHPRPCMKTNCKAGMNMKRREDGIWIIYSVVKEHNHDID 173
                       5*****************************************99887....99**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-2188173IPR004330FAR1 DNA binding domain
PfamPF105512.8E-27256349IPR018289MULE transposase domain
PROSITE profilePS5096610.052536572IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-6544570IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-5547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MPAEEEDVNS HEGSENILVA PHCNSGENVN SHNGGEDMMV APQHDSEEND ACIMNQVGTN  60
STVDVHHRLL STDPRIGLEF QTKEAAYSFY REYARSVGFG ITIKASRRSK KSGKFIDVKI  120
ACSRFGSKRE SSSTVHPRPC MKTNCKAGMN MKRREDGIWI IYSVVKEHNH DIDPDDFYNS  180
LWGRTKQVGA LAYQKKGLQA FLNEEDTQVM LEHFMSMQQE NPNFFYAIDL GPDKCLRNVF  240
WVDAKGRHDY GSFCDVVYFD IFYVKEKYGI PFLPIVGVNH HAQYLLLGCA LIGAEGKLSY  300
SWVMQAWLNA MGHQAPKVII TDQDKQLKEA VADVFPDIRH CFCLWHIFRK IPLTLAHVLD  360
KYDKFMDKFN KCVYLSWTEE QFEKRWQKLI HKFEVGEDEW VCSLYEDRKK WVPTYMQDAF  420
LAGMSSADRT RSMTAFFDSY LYRGISFKDF LKQYKVYLQE RYEREAASDA ESRYKPPVLR  480
SALTFEKQLS TIYTNAVFKQ FQDEVLGVEL CHLQRENGNE LAAIFRVEEY RKSQNFVVSW  540
KKVDSEILCS CKSFEYRGFL CRHAMLVLQT SGVSSIPCQY ILKRWTKNAK IRETESEKSK  600
ELLASRMQRF NDLCKRAIKL GEQGSLSQEA YNIACQALEE VSRQYSRVNS RWSVSEPGLV  660
AVHQNAEAPE ENNRNVVKSL KRKKICKKRK VVHFEQGGAA IRTQDNFHDV EQASSRTEGQ  720
DNRWISQQGM QDMELNFRTA SLDGHGDAHQ SMQGVGRLHS VPSRVFHCGT PQSLQELGHV  780
GLRAQEIPGC FPVHSDFQNT GQPVGSMHLQ FQGIALKNWQ DKKLHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727910.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBLA0A059DCQ80.0A0A059DCQ8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010044813.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.40.0FAR1-related sequence 2