PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00605.1.p

Common Name

EUGRSUZ_A00605, LOC104453210

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 531aa MW: 59784 Da PI: 4.7155

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00605.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	114.7	1.2e-35	155	524	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL + ea +++++el + + +r+ e +sp g++++Rla+y+ + ++r ++e + ++ aa+ +f +++P+ +f+h Eucgr.A00605.1.p 155 HLLKAYREAGNHEQKELMEVISTRIAEKSSPLGEALERLAFYLFQTPENRSDC---------LTRE----SCKNFEAAFLAFDQAFPYGRFAH 234 56666667777788889999999******************9999998665.........2222....35566678889******** PP GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl 181 ++aN+a+lea+ e++Hi+Dfd+++G+QWp+ ++a a+R++ l++T + e+ + + t++rL++ A+++gv++ + + Eucgr.A00605.1.p 235 FAANSALLEAMPDGvETIHIVDFDMGEGIQWPPVIEAVAQRNKT---LKLTSLTCDEERrgqdaqLNWNFDDTKRRLHDHARSFGVNLTVDSM 324 *******7666**********************776...8888877655555655444456679***************98 PP GRAS 182 vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adh.nsesFler 256 ++++l ++eLr ++ +E ++ n+++ l ++ + +++ + +++ ++ k + ++++ + + ++ n +++ + Eucgr.A00605.1.p 325 ---NIANL-VNELRKRNegdanKEWMIFNCMVGLPHMGRTTTTRR--VNDFFRVAKAFladradwfahTAGIITFGDGNgfEKLkNCSTLGDF 411 ...44444.4555444445555***********95544444..577777777652222222222567999864344699999999 PP GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 f + l+ y ++++s+++ +p++ e ri +E ++++ i+++ ++r+ ++ + + +++ + + +a+ +l+ s + Eucgr.A00605.1.p 412 FDNLLRRYHSILESMQSDFPPQLsESRIAMEMLFVAPFISSLSWLHRWG-EMRNG-----TDAPVAQDLDRLRIARESVVEAQEMLKGKTSYE 498 99*********8888776539999999999999888764443333.44555.....455556667778999999999999999999777 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 ++ e+ ++++l Wk+++L +S+W+ Eucgr.A00605.1.p 499 VKLGEQGNEMFLEWKGHELARFSSWE 524 8888*******************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.369	127	504	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-33	155	524	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MVMQSGSPPA SWPFHNLTTS TINPLGNYSS NFDFQVGDYG MIPSPISDIT DDSIVQFGMH 60 TAFDASPGVG CELEDFTMDF EGLEAFLNGD EPENTSEMSD GSFASQKAAA EAWSPTSTLS 120 KSEESNSAGA SATTRLPWTL PAKEMEVDNL LSLHHLLKAY REAGNHEQKE LMEVISTRIA 180 EKSSPLGEAL ERLAFYLFQT PENRSDCLTR ESCKNFEAAF LAFDQAFPYG RFAHFAANSA 240 LLEAMPDGVE TIHIVDFDMG EGIQWPPVIE AVAQRNKTLK LTSLTCDEER RGQDAQLNWN 300 FDDTKRRLHD HARSFGVNLT VDSMNIANLV NELRKRNEGD ANKEWMIFNC MVGLPHMGRT 360 TTTRRVNDFF RVAKAFLADR ADWFAHTAGI ITFGDGNGFE KLKNCSTLGD FFDNLLRRYH 420 SILESMQSDF PPQLSESRIA MEMLFVAPFI SSLSWLHRWG EMRNGTDAPV AQDLDRLRIA 480 RESVVEAQEM LKGKTSYEVK LGEQGNEMFL EWKGHELARF SSWEYRPKRW *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MVMQSGSPPA SWPFHNLTTS TINPLGNYSS NFDFQVGDYG MIPSPISDIT DDSIVQFGMH  60
TAFDASPGVG CELEDFTMDF EGLEAFLNGD EPENTSEMSD GSFASQKAAA EAWSPTSTLS  120
KSEESNSAGA SATTRLPWTL PAKEMEVDNL LSLHHLLKAY REAGNHEQKE LMEVISTRIA  180
EKSSPLGEAL ERLAFYLFQT PENRSDCLTR ESCKNFEAAF LAFDQAFPYG RFAHFAANSA  240
LLEAMPDGVE TIHIVDFDMG EGIQWPPVIE AVAQRNKTLK LTSLTCDEER RGQDAQLNWN  300
FDDTKRRLHD HARSFGVNLT VDSMNIANLV NELRKRNEGD ANKEWMIFNC MVGLPHMGRT  360
TTTRRVNDFF RVAKAFLADR ADWFAHTAGI ITFGDGNGFE KLKNCSTLGD FFDNLLRRYH  420
SILESMQSDF PPQLSESRIA MEMLFVAPFI SSLSWLHRWG EMRNGTDAPV AQDLDRLRIA  480
RESVVEAQEM LKGKTSYEVK LGEQGNEMFL EWKGHELARF SSWEYRPKRW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-16	153	426	5	269	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00605.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066039.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein
TrEMBL	A0A059DCA0	0.0	A0A059DCA0_EUCGR; Uncharacterized protein
STRING	XP_010066039.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	3e-16	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A00605.1.p
Entrez Gene	104453210