PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00584.1.p
Common NameEUGRSUZ_A00584
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 363aa    MW: 41559.1 Da    PI: 9.6309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00584.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022128146523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        Cg +F+ + +L++H++ H
  Eucgr.A00584.1.p 128 ECGATFKKPAYLRQHMQGH 146
                       7***************988 PP
2zf-C2H216.91.8e-05183207123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F+    L++H  +H
  Eucgr.A00584.1.p 183 HVCPevGCGKVFKFATKLRKHEDSH 207
                       79*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035520082102IPR015880Zinc finger, C2H2-like
SMARTSM0035539127146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055183212IPR007087Zinc finger, C2H2
SMARTSM003550.0093183207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185207IPR007087Zinc finger, C2H2
SMARTSM003552.5215238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85215238IPR007087Zinc finger, C2H2
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
SMARTSM0035531241262IPR015880Zinc finger, C2H2-like
SMARTSM00355190273292IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.7E-5290320No hitNo description
Gene3DG3DSA:3.30.160.602.1E-4291321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140298324IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSDLIIRYCF SFFFFFLLLL SSLRRLRQRE AGRRRGRPLL VLGEGLPLQS LRRNLTVALY  60
TSSCSYLIVC ATIANRWLYY REHCGICRSR KSLVTSHIQS RHEDEVEAAL VQGVEGKEGA  120
KANNTSEECG ATFKKPAYLR QHMQGHSLEL SFAYQGNMKR HLNGIHNDEE PSTSSECKSL  180
KQHVCPEVGC GKVFKFATKL RKHEDSHVKL ETVEAFCCEC MKYFSNVDYL KDHMRSAHQL  240
VNCDICGTKQ LRKNIQRHLL THEKKNSADS KAFICEVEGC LHIFSTHVKA VHLGVRPFVC  300
GHKDCGKKFA YKHVRDHHGK TGCHMSKFQS RPRGGRKRKC LTIESLLRKR VTLPNELDFL  360
LD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330338RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00584.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-172PREDICTED: transcription factor IIIA
SwissprotQ84MZ42e-68TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCQ60.0A0A059DCQ6_EUCGR; Uncharacterized protein
STRINGXP_010034379.11e-171(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-71transcription factor IIIA