PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS782881.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 66aa    MW: 7591.71 Da    PI: 8.5108
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS782881.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08727526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   C +f++ G Ck Gd+C FaHg
  EcS782881.10  7 ACLDFRK-GACKKGDSCEFAHG 27
                  59999**.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.6E-5328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.098729IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-7727IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-6829IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43464IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.393761IPR000571Zinc finger, CCCH-type
SMARTSM003562.63760IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
AIHFGTACLD FRKGACKKGD SCEFAHGVFE CWLHPERYRT QACKDGQSCR RRVCFFAHSP  60
DQLRVL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049147.13e-37PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
RefseqXP_018725834.11e-37PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N43e-34C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
SwissprotQ9FU273e-34C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A059CV962e-36A0A059CV96_EUCGR; Uncharacterized protein
STRINGXP_010049147.11e-36(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-35C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  4. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]