PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS782740.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 17116.1 Da PI: 7.6338 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 88 | 108 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg EcS782740.10 88 ACPDFRK-GACKKGDSCEFAHG 108 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.0E-5 | 82 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 83 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 87 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-7 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 115 | 146 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 118 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
GGGECCNDLT ALRRFLPSNH HQDEEDEEDG RAPGEDGVLG CDEFRMYEFK VRKCARGRSH 60 DWTECPYAHP GEKARRRDPR RFFYSGTACP DFRKGACKKG DSCEFAHGVF ECWLHPERYR 120 TQACKDGHSC RRRVCFFAHS PDQLRVLP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049147.1 | 1e-105 | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | O82199 | 2e-71 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A059CUK7 | 1e-100 | A0A059CUK7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049147.1 | 1e-104 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 7e-74 | C3H family protein |
Publications ? help Back to Top | |||
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