PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS782206.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 225aa MW: 25396.2 Da PI: 4.565 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 172.4 | 3.5e-53 | 2 | 219 | 80 | 298 |
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 a ++ +e+sP++kf+h+taNqaIlea+ ++ vH++Dfdi++G+QWp+L+ La + +slRiT+++ + + + ++++tg+rL++fA++++++f EcS782206.10 2 AIQMIQELSPYIKFAHFTANQAILEATLADRDVHVVDFDIMEGIQWPPLMVDLARHN--EASLRITAIVT-DLETEASIQQTGRRLKEFADSIDLRF 95 678899************************************************965..569*******9.66799********************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adh.nsesFlerflealeyysalf 268 f+ l+ ++ ed+ +++ + g +++ n++++ +++++ +s+ ++L + lsPk+vv+ve+e a+ +s sF+e f+eal+yy+al EcS782206.10 96 TFDQLLIQEEEDF--RTI-HQAGHTVIANCMINQPHMPSKCLSMVR---TFLGGMTALSPKIVVLVEEEllnfAKAsSSLSFVEFFCEALHYYMALS 186 ****988755555..666.46799**************88888877...********************86654444667***************** PP GRAS 269 dsl.eaklpres..eerikvErellgreivnvv 298 dsl +++ + +++E+e+lg++i + v EcS782206.10 187 DSLvNVSSFTGGyeMCLKVIEQEVLGKKILDSV 219 ***75553222233677899*********9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.445 | 1 | 225 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-50 | 2 | 219 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
SAIQMIQELS PYIKFAHFTA NQAILEATLA DRDVHVVDFD IMEGIQWPPL MVDLARHNEA 60 SLRITAIVTD LETEASIQQT GRRLKEFADS IDLRFTFDQL LIQEEEDFRT IHQAGHTVIA 120 NCMINQPHMP SKCLSMVRTF LGGMTALSPK IVVLVEEELL NFAKASSSLS FVEFFCEALH 180 YYMALSDSLV NVSSFTGGYE MCLKVIEQEV LGKKILDSVR QFPCE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-28 | 1 | 215 | 97 | 300 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276350.1 | 6e-97 | PREDICTED: nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A059AKA9 | 1e-145 | A0A059AKA9_EUCGR; Uncharacterized protein | ||||
STRING | XP_004503962.1 | 6e-95 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35344 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-34 | GRAS family protein |