PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS781533.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 64aa MW: 7442.32 Da PI: 7.5238 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32 | 2.5e-10 | 44 | 64 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDg++WrKYGqK + gs++pr EcS781533.10 44 DDGHTWRKYGQKAILGSNYPR 64 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-9 | 38 | 64 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-8 | 40 | 64 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.154 | 44 | 64 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-7 | 44 | 64 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MEEMDMINNR GENLSSIYYR RDEGEKRVIR VAAPQMGNTD IPPDDGHTWR KYGQKAILGS 60 NYPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067620.1 | 5e-24 | PREDICTED: WRKY transcription factor 55 | ||||
Swissprot | Q9SHB5 | 5e-17 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A059BIB2 | 3e-23 | A0A059BIB2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067620.1 | 2e-23 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-19 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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