PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS760789.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 165aa MW: 18741.2 Da PI: 8.5918

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS760789.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.2	2.3e-38	8	125	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e ++wyfFs++ + r+t +gyWk g ++v+++++ EcS760789.10 8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLELYPYDPWELEGKALSEGNKWYFFSRK--------TPDRITGNGYWKPMGD-EPVFTSSS 94 79***********************999.99***********77778899*997........4689******98.67777799 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+k++Lv+y g+ap g++t+W+mheyrl EcS760789.10 95 KRVGMKQSLVYYLGEAPGGTRTNWIMHEYRL 125 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-46	5	132	IPR003441	NAC domain
PROSITE profile	PS51005	41.634	8	141	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	9	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLELYPYDP WELEGKALSE 60 GNKWYFFSRK TPDRITGNGY WKPMGDEPVF TSSSKRVGMK QSLVYYLGEA PGGTRTNWIM 120 HEYRLSNGTN SGSSSSRSSK RKGYPKIVCL SSPIYYYTVG LDTLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-42	4	135	16	155	NAC domain-containing protein 19
3swm_B	2e-42	4	135	16	155	NAC domain-containing protein 19
3swm_C	2e-42	4	135	16	155	NAC domain-containing protein 19
3swm_D	2e-42	4	135	16	155	NAC domain-containing protein 19
3swp_A	2e-42	4	135	16	155	NAC domain-containing protein 19
3swp_B	2e-42	4	135	16	155	NAC domain-containing protein 19
3swp_C	2e-42	4	135	16	155	NAC domain-containing protein 19
3swp_D	2e-42	4	135	16	155	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030072.1	1e-106	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-56	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A059ASW0	1e-104	A0A059ASW0_EUCGR; Uncharacterized protein
STRING	XP_010030072.1	1e-105	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-58	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]